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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774625693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bdCR-jMpfOimjxGZhmB1Yp-c2AtBsloLX2X~KIiODIBv0gShqKj3FTsOKLK~au2l7gQ0H5EVLw07pgoFMrfzhdqZn4WPu5ozX9RgpRDV05vPL~1t6XfrZr~qTitdECM5Ua~ETevoARd~30HUcQwiBti9Vs7JWFo6kQoSt~oj~WeBhbOFw3Xs3rF~omQaOPMAWxm0xcYgopFsLoIAZqNSvO7D9OgwLYCQxLtvCjijSeRxjFPpmfvkRGRYu8-E~lNAARjims4S6Z5eoDlaTdWXd7DUW11ZbsGZKzpxyoWRvckfOG-3heHHmFyTCWdViqtulUjdZtw9ksQj971h9vMiVg__"

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Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774625693&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Aq-wOqiITrkWaMjNr5MjkmcrhBtKhPJJyQ5AAfFzMrM4F34v2tJ4l7ihY5-A0sO-QHzXQUOHwWLsJMlNTF2TP1gMDN7QT~VtwE-tcwDCXeJanoVpf95YybVaLsDd9FkfwA5WBrBJet7LboUnfaRX~u2GlmBpmNngKHAGlhBQBfXitkQLYWu4spjeKymGHu7vYAwwPv9wLlO7UxBtGIvZuQt3V3xrhaEx3QgcNi3P-PeC78RtfN8x27EBy29JnJBFpVZEZdMXuYHgp4SOeLj5~Jt-srQc3Iwb2rsCnrFfmF03Bt7FmHfxEmnd7EyxfXQP9NaBt-YS0uEjxyC~~jDX8Q__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes