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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774625978&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Yf2K~976A2lHVY7WUx8ZyhsuTeVS2LYG-92JS8BcnPE7KFJHr5KR7fHHNhZpXhLl5SjWXxZMHFBDVX5SIvjpwjShRisLi9SxxieJs0BQAcCsn-MyoL9GV2IxK2v7dWv5vf29wy0JYdyDEgLetwxkCBimn6rtC2TUWFiIgrPdqqFVQaq-hoPpO52uwvn5QCcwQC4YXES0FVqwnnz1Ztn8UJlKxEZwuEFrBWe5A4nG2PmHh1bNbE44RWlu9X6bsDKq69CETvM07vD5jtN8HXfCrpwYlXDy1oCVH6oFQAQXyt7Q52TLRjU7PR7tMMAq69dv-ZCuGU4GFSluXSV1EQaeBQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774625978&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=XaowsUa9eXfrJiP5PGEN6WFZOnKdJkYRQg57KVLf~dUUInciNCtWpYf2YVIdC5L2Vb0YhiVU41fR65zNP3I0VDrwGXdghkeIJayNwGj~Xg54r4sasAPnACUP4xl9-j~x9EUoYs5BVUBUvOyWMTATs4CkDchv2~f4nVoCPQWNqXX9PWW0r10gP0TnVqCXYRAfCh00CDMnxG~PGGAGWWZBkYiBQkPGkNrF640nJahGXReiZwMHKSrbefVPalKGtAV5rBlyAEstEXWe7KpshAvHW4Yg3ebXJaLEzi2tQ3uwIisqZunKlgpFDlZqmybPorb2pSfLwOhPb4M6rFPvXDtHtw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes