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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774626127&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=dW--qEec~9ehjW07TGNKUXnR8JNeZfsePfmYopgxRK8Og7M9C6M~wHKaa6IA13e-DkSB0lnDgie82nTjI-lK31-ouJs7KbIeTgrG3DxKxXZ0QfMeqQNnCKKuVDk8VxONHtW7CW-JU2QR2FzHrPpsm4eZ50wG1~ygnIceFWRG~K5f~VUHQuTRVoM601dUaxO4XvxQ~9W1a1tsBQFzhu~uMYj1UQhautolzHP6RGJ74Ws7vIpBQDyB0ovZIpfT7eGdf~w8jIjxmZ5I~LOBr~fQy6ngnx3ePPvOqNt~SHdPTQEyXJBphpo0jQu0oVjbP5VCO-p20JyUOOYAE5Cd5zR6sA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774626127&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=DDZf~hf007LJSYJzYef7YhTzvv7Dg6ZBa2nYeaCIV0gnAC0cRb4mkaqVIkDGQpj6kuYnAuM1zcK-r7O~YL7wPeDBIOLZkQk3ckXr-dXoMDgZ6BsYQ1zSF37GB-mQ94gPfl3DGP3HeN2Oh2cEZiqI2x40IwYmBL8VUFjWfV702PSp7NDMSG1tlBqx3FZNZ32fKhy6Jj9ZKH68X9oHXBpgKCYvZJKw4owB618HTDWk1lG0fJFoy5Pl-dJ8TG~SzMW5F5KxvUcvjCcFIJegsNjFyHEMLNm2G6NQJLCgrVQ5wPmPmaOJ5iK-HcbJfFTHceOclEckqLNeHkJfND-jrhWKQA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes