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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774629894&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=A2Bzn4G1iUjP6z19a9B3iPUsrTHDVORSZBSehOi3O~ly7qdBhdUWuX~mTJ1bjjGER1WmF2yXQtSMdqp1Uy6XZcQe8E0hj0zveKCeqGsNOTt-4L-Wq54xDutWsb9udhp1L8C5LgRvd39G568PyQ6BpAmey-QDDJco6byuwit5IE~NalIVPStUG2ny4V2-4ScYmCncqKqbgWQVD-nFIa2xmUGdKe64mB3fraemRj0qCuvHm9XdXQsuOCyEMsE0KRu4~WYuMXi3wtfnTTx4AbYOzQ09JraOvNNO1KivNn9iWWI9FTgi-u3qGIcRr-RPR1t0WtXnVMpVOYbiCf2JKJSB1Q__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774629894&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=BLg61OrcKMYROzTsJw3SWjbJle5RwTurllingtvdwopXPH~cTG8s0CnCll946DgzP9t6hqIGzGBa0NfUMOQ4Oj8pxoVz36OcNTSqkJRZl8u3NOCiDR9y2EFD51KR1gZc7jpYZbw3vPmLqUZaeiJW6BzlBModCBRNT-ljLIa9k3rp-y5iPhuV9~M0odbIH7991ZdHz5b60MrIWNnsNTxTU2QrsWbrhzUkBh8RbtaaasFAqyyTmzb1gBYQfg5E8IWk4F8llRqmO4CutNjGtyenl4LrVeDSn1UPfahfWEvMR4H-Ce9tCplheEn6kulpCtL5-~SWkEQC-q0J7cXQN~eu2w__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes