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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774630221&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=TsQfQSNdR9L06hQ73GMB6xbrod0UBHhT1nZ7tnO6PLoVg3iQWfh8n9JnYRjIfZd~qGbESRN-OAaLrhi~Q~HEFhy6OZYOYWk9-xEH6W5SY9nqC~4UrDIV9XNyuq3OaC9PS3AbhojOLvhaCC~ngNnjBDzgd7xkXqAD9rJ9aq3TmreK1etD3hp57tlM6dlXCks0qmOaYUhehek67nZnaDbxkoQYNHWAaUrGXIS-U2wWQxQRVKhq4zok01oQDmKp5~Qm-2LaPuLAxI8-MsNQaZdWF6aDBH~qTQDRwEj9y4P9ISqY-BN6a55GvdxixxWJi7hkVd35k7AEv~ABwPsK1kRB5g__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774630221&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=V91znukfF78d-d4m2XLNQm8qE-3TTsVQUxgJGnqFNkpthJwMzIqPChaPUEk3JNseWsC3TMWzgvHUkuW8QEmSOx1kY5wqNUMZbY1tqYGnEk7Dzs3lGeRtZXjdxU708pJmGHmxAGDURZiEHj5ieyhPamL-RiU2yah3H6LUCA8wKsxsiLrYBTWBPl0LfqePQ6JIPisAswBFiYFIZwzocLfWhKDrLVnoe3ELHz4GSw3HBbFZ-pHh22mCCgn3bj-bu2T~~1FgtqhAyE67NwUp-OOEiNL8hZROY3bNKEYFe3pbLC~w6AoXbMqEep4ujrxYx6gFRjdPy5Kyr2TBeDagB2~srg__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes