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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774630319&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SLTH1Yz~EUd6qUcGy8~YJcj0QUFjnjrgMr-ch4~PBbgr9iPwCldnWJ2I-OPljHXv1JQrPdc7a5aJK4crwk10nbSwgrca3-K5kSjaLeEcKi2iyDDEZhZoFjzHaDGDxtD5hQkG3eJP1QhPDdJop49bP7BIFXbwAgyxZns2opCKJa16yYO~drjNwshFI1wdlqTMM-XLH8G2rZZrKFqDEOET-F6NyLPRYj~~oXF6Jmlc569NDXn8lQ~sU9m0uvARv0pu9B~vQysQA8yb5SrmeaVmqk9ctlh56O-Q9kqhCSYYhlmTgwDPXlNE9HvrV3WDjzazrTp4YXXPDxcimrWMlo3d0w__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774630319&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=e1Iy8NKdJGqMKMsOfO5TB-2-c8FZg4yS87rfu1xZI-nt0vsbQcs-z9Zl7omdfEjO9ZflHbh1RNVlM4dVLZ-OTCsMuFzSDU93qhsO925qXr1HP69LgZ~binD1A9v64KWHP9cXsH0F9otPe7hufeiZcEOjqm4f9kU~zF3XXz~cfn0Sek21nMkfSiM5Xwt8mlyZTAvYxFxDg~NgW3vGmljHpcW-8z2GcBQ8vS6u~LfnFwSEX8kfLLuYyf9QdbATwfDokDO2loeH4FxEXZJQ4RPuQk26YDwIVSrG3H5gIqEJiHTt8xcCtT37onfh73NkzsxCKkbQdSX~VOxdrsbV5b8hvw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes