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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774621434&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hDd~UCheRKMPmBDsdaRObrvkeSbQdJpb7Wu3gtBKPtrgbmPPerOCUWi6hdhoNQ4oTyGEZzak~bVOrAgmTIhlDv5~vpuMRJYfn~otCGDHQtGaXHYvvi4~m2h207wHPsllXTPw7DigCAfT-mxDUZlZBmURFueEyEo2ZMmAwFuV~Mef6hDo3n0TxRuvhNzzXVMMRIJBB9d0QGscQkIewqLcxTXBNE~A3E3iXwa2gpoCBaK0XTI41gunX2zAxZldgKYMqjD7mTBVXsGz7JIA0TEpQfutBRB1pvvL6SkouM7FKZUIiBm6XgZkznoNBdMXRmemFYf-UQG-Gr-MMCvwt62Oew__"

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Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774621434&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Ej4Kv8E6GcLR-NOsjZKukLtzewMVJ2oAOKLO-VUi4o6HGDY-NEWWnu0ZWoK6zJvIQJ87MU1PteyYbYKUreByWrsCDOGJ-91m2p9wzA4n~zaet3Jq-OOJnhQD9epmCVMEIFoKxr2yNgoiIaZHXAR0UcpJTTKteQGy~jHaVG25iiB8opnlWC1GJ1sKORnvt8CD4B2FlU04CHyNj~3OaZvKT-CBIB7lUWWFNl1canz8UPiCKoRd08rGupo6cUCrsDgnjaAlvIToIUeUgS2AjyOnlAYv-2m9~bi0l3X~AxrxysztXVwHAZAnIkaMfpDT3YqjnxtnMFNp71flQ6NIrNHUyA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes