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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774625983&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=WI9RPkawFdfZCi1KzAcKKTzBL0K1sgeM-Bzz7Q2U4vb4dX-WytLAMWTvyLZP6CvFDK5BtYKJt2wPPewJEIU2AKFgyvQHMxwFjzcs9PhKt1k1ZNx0lnV2NML6gK4H5HH4Ejhunmo3kDzv7Nj8lW4sUpFJ98ILZX90kgf~tutnr5N~4OqKLIGw9dc8UAmB3IbfX7ei-oF3ca~1JPnQ31NAlLvOUCuis-iuQd0pTHG9~W1vRpQxNMMVy2Tust0HiLKfRi2JrdvFD81pmU5BiBG5UjEp5S8xa6gFugERDmwdgoXfLJwHhoqNc4HC8ESaQHoWKey-MkZ8vE8VnhPSXsSxiQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774625983&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=VlcYbOnItjGzOWQdSuYiObseP-DTc73cd7ahyIDiz2tKfjyEy05dPVo3nmc9OfQ8aA0dH7uRascBb62wmOMyuYGn~qJTKG1QE2y5DyR6cx6lESlVbI01whSyiIM~es16KWlswP1o5j65kBYZ0PM8JRH~oZNsZ0DrSoSGfx1Q3EngsndfVonL8LgDAr9SoYAMsBjE2iCaLPyMfnJt94ADzQIWatYhALmUgHSRn1k1M1R~BKpaeNMiLSNIOUXHh2WSTBV32XdTD7S4CUWBydLk4hOr5TE7NatEDPOtpUwRyAWE-DAOfDPqpbB968ItM770ofX5z7USXAURpZUqn-WjTw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes